LINKS

 
 
Links to Protein Flexibility
Prediction, Treatment and Application in the Docking Area

 
 
The CAPRI Contest

http://capri.ebi.ac.uk
 

Online Resources

Molecular Surfaces: A Review
http://www.netsci.org/Science/Compchem/feature14.html

Database of Macromolecular Movements
http://molmovdb.mbb.yale.edu/molmovdb/
http://molmovdb.org/cosb/

A movie depicting conformational changes of DHFR
http://chem-faculty.ucsd.edu/kraut/dhfr.html

DNA Polymerase Beta MOVIES (large amplitude mouvements)
http://chem-faculty.ucsd.edu/kraut/bpol.html

Structural Database of HIV Protease
http://srdata.nist.gov/hivdb/

Molecular Animations of Large Molecules
http://www.leeds.ac.uk/bionet/animation/mol_anim.htm

Molecular animations
http://delphi.phys.univ-tours.fr/Prolysis/molecanim.html
 

Research Groups and Organizations

Protein Dynamics and Flexible Drug Design
http://www.cs.rice.edu/CS/Robotics/protein.html

Rigid and Flexible Docking Methods
http://bioinfo3d.cs.tau.ac.il/Education/CS99b/class_notes/class6.html
 

Software

FIRST - Software to predict the rigid and flexible regions in protein structures
http://firstweb.asu.edu/
 
 
 
 

 

Other links ...


 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Protein-Protein Docking

Software for Protein-Protein Docking 
http://www.bmm.icnet.uk/~smithgr/soft.html

Macromolecular Interactions
http://www.bio.vu.nl/nvtb/Docking.html

 
 
 
 
 
 
Research Groups and Organizations
Villoutreix's team : Application of flexible docking on blood coagulation proteins
http://www.pharmacie.univ-paris5.fr/bioinfo_avenirteam/VF.htm

Molecular Modeling Group (France)
http://www.cpe.fr/gmm/
 

Courses and Tutorials
Folding in silico: ab initio and de novo methods (french)
http://www.ibpc.fr/~bastard/Cours_AGM2