Publications

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Mazur AK, Petukhov M.G, Elyakova L.A.  1988.  Model of spatial random movement of depolymerase when interacting with the substrate. Biophysics. 23:417–421.
Mazur AK.  1997.  Common molecular dynamics algorithms revisited: Accuracy and optimal time steps of St\H ormer-leapfrog integrators. J. Comput. Phys.. 136:354–365.
Mazur AK.  2010.  Anharmonic torsional stiffness of DNA revealed under small external torques. Phys. Rev. Lett.. 105:018102.
Mazur AK, Kuchinski A.V.  1992.  Schematic methods for probabilistic enzyme kinetics. J. Theor. Biol.. 155:387–407.
Mazur AK.  2016.  Homologous Pairing between Long DNA Double Helices. Phys. Rev. Lett.. 116:158101.
Mazur AK.  1999.  Symplectic integration of closed chain rigid body dynamics with internal coordinate equations of motion. J. Chem. Phys.. 111:1407–1414.
Mazur AK.  2009.  Kinetic and thermodynamic DNA elasticity at micro- and mesoscopic scales. J. Phys. Chem. B. 113:2077–2089.
Mazur AK, Abagyan R.A, Elyakov G.B.  1989.  A new approach to the modelling of the structure and dynamics of biomacromolecules and their complexes. Doklady. Biophysics. 304:456–460.
Mazur AK.  1985.  On the possible mechanism of multiple enzyme attack in polysaccharide degradation. Mol. Biol.. 19:1400–1408.
Mazur AK.  1998.  Accurate DNA dynamics without accurate long range electrostatics. J. Am. Chem. Soc.. 120:10928–10937.
Mazur AK, Haser R., Payan F..  1994.  The catalytic mechanism of {$\alpha$}-amylases based upon enzyme crystal structures and model building calculations. Biochem. Biophys. Res. Commun.. 204:297–302.
Mazur AK.  2001.  Molecular dynamics of minimal B-DNA. J. Comput. Chem.. 22:457–467.
Mazur AK.  2007.  Wormlike chain theory and bending of short DNA. Phys. Rev. Lett.. 98:218102.
Mazur AK.  2013.  On the origin of thermal untwisting of DNA. J. Phys. Chem. B. 117:1857–1861.
Mazur AK.  2011.  Local elasticity of strained DNA studied by all-atom simulations. Phys. Rev. E. 84:021903.
Mazur AK.  2001.  Molecular dynamics studies of sequence-directed curvature in bending locus of Trypanosome kinetoplast DNA. J. Biomol. Struct. Dyn.. 18:832–843.
Mazur AK.  2008.  Statistics of time-limited ensembles of bent DNA conformations. J. Phys. Chem. B. 112:4975–4982.
Mazur AK.  2001.  Internal coordinate simulation method. Computational Biochemistry and Biophysics. :115–131.
Mazur AK.  1990.  Toward a theory of quasi-steady-state enzymatic processes. Mol. Biol.. 24:202–208.
Mazur AK, Sumpter BG, Noid DW.  2001.  Internal coordinate phase space analysis of macromolecular systems. Comput. Theor. Polym. Sci.. 11:35–47.
Mazur AK, Nakatani H..  1993.  Multiple attack in the porcine pancreatic alpha-amylase hydrolysis of amylose and amylopectine. Arch. Biochem. Biophys.. 306:29–38.
Mazur AK.  1997.  Quasi-Hamiltonian equations of motion for internal coordinate molecular dynamics of polymers. J. Comput. Chem.. 18:1354–1364.

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