@article {2020|2144,
	title = {Implicit Modeling of the Impact of Adsorption on Solid Surfaces for Protein Mechanics and Activity with a Coarse-Grained Representation},
	journal = {J Phys Chem B},
	volume = {124},
	year = {2020},
	month = {Oct},
	pages = {8516{\textendash}8523},
	author = {Bourassin, N. and Marc Baaden and Lojou, E. and S Sacquin-Mora}
}
@conference {2016|1415,
	title = {Interactive visual analytics of molecular data in immersive environments via a semantic definition of the content and the context},
	booktitle = {2016 Workshop on Immersive Analytics (IA)},
	year = {2016},
	month = {March},
	abstract = {<p>Bringing together, in a unique immersive environment, visualization and analysis of scientific and complex data requires a thorough approach in order to fulfill scientists\&$\#$39; specific expectations. Such an approach needs to consider the highly heterogeneous nature of data, the dynamic interactions between experts and data, and the large amount of data involved in scientific studies. Whereas small and static scientific datasets can quickly be deciphered thanks to standard immersive tools such as 3D visualization software packages, bigger and dynamic datasets exceed the analytical capacity of these tools, requiring an efficient platform for their manipulation. Through the example of the structural biology field we discuss the need for an approach based on a high-level definition of the content (scientific data) and the context (immersive environments and interfaces). Our design is illustrated by a platform for dynamic and intelligent representation of data to the user. The data hierarchical classification will provide new ways to interact with the data via intelligent and direct relationships between them. This approach is based on the semantic definition of all the concepts manipulated in the virtual environment, either abstract or concrete, which allows for an adaptive and interactive experience of both visualization and analysis.</p>
},
	keywords = {Computer Graphics [I.3.7]: Three-Dimensional Graphics and Realism-Virtual Reality, content high-level definition, content management, content semantic definition, Context, context high-level definition, context semantic definition, data analysis, data dynamic representation, data intelligent representation, data visualisation, Data visualization, molecular data interactive visual analysis, Ontologies, Resource description framework, Semantics, static scientific datasets, structural biology field, Three-dimensional displays, Tools, virtual environment, Virtual Reality},
	doi = {10.1109/IMMERSIVE.2016.7932383},
	author = {M. Trellet and Nicolas F{\'e}rey and Marc Baaden and P. Bourdot}
}
@article {2014|1411,
	title = {{I}nnovative interactive flexible docking method for multi-scale reconstruction elucidates dystrophin molecular assembly},
	journal = {Faraday Discuss.},
	volume = {169},
	year = {2014},
	note = {[DOI:\href{http://dx.doi.org/10.1039/c3fd00134b}{10.1039/c3fd00134b}] [PubMed:\href{http://www.ncbi.nlm.nih.gov/pubmed/25340652}{25340652}]},
	pages = {45{\textendash}62},
	author = {Molza, A. E and Nicolas F{\'e}rey and Czjzek, M and Le Rumeur, E and Hubert, J. F and Tek, A and Laurent, B and Marc Baaden and Delalande, O.}
}
@article {2013|1531,
	title = {Interactive Molecular Dynamics: Scaling up to Large Systems.},
	journal = {Procedia Comput. Sci.},
	volume = {18},
	year = {2013},
	pages = {20{\textendash}29},
	doi = {10.1016/j.procs.2013.05.165},
	author = {M. Dreher and M. Piuzzi and A. Turki and Matthieu Chavent and Marc Baaden and Nicolas F{\'e}rey and S. Limet and B. Raffin and S. Robert}
}
@conference {2010|1410,
	title = {Interacting with Molecular Simulations using a Multimodal VR Framework},
	booktitle = {EuroVR-EVE},
	year = {2010},
	pages = {1{\textendash}4},
	address = {Orsay, France},
	author = {A Tek and B Laurent and Nicolas F{\'e}rey and Marc Baaden}
}
@article {2008,
	title = {Interactions between neuronal fusion proteins explored by molecular dynamics},
	journal = {Biophys. J.},
	volume = {94},
	number = {9},
	year = {2008},
	month = {may},
	pages = {3436{\textendash}3446},
	author = {Durrieu, Marie-Pierre and Lavery, Richard and Marc Baaden}
}
@article {2000|1460,
	title = {Interaction of trivalent lanthanide cations with phosphoryl derivatives, amide, anisole, pyridine and triazine ligands: a quantum mechanics study},
	journal = {J. Alloys Compd.},
	volume = {303},
	year = {2000},
	note = {22nd Rare Earth Research Conference, ARGONNE, ILLINOIS, JUL 11-15, 1999},
	month = {may},
	pages = {104{\textendash}111},
	author = {Marc Baaden and Berny, F and Boehme, C and Muzet, N and Schurhammer, R and Wipff, G}
}
@inbook {2000|1559,
	title = {Interfacial features of assisted liquid-liquid extraction of uranyl and cesium salts: a molecular dynamics investigation},
	booktitle = {ACS Symposium Series 757},
	year = {2000},
	pages = {71{\textendash}85},
	publisher = {Oxford University Press, New York},
	organization = {Oxford University Press, New York},
	chapter = {Calixarenes for separations},
	author = {Marc Baaden and F. Berny and N. Muzet and L. Troxler and G. Wipff},
	editor = {G. Lumetta, R.D. Rogers, and A.S. Gopalan}
}
